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License agreement

The new version of CDPro, originaly developed by the group of Prof. Robert Woody (see references), was developed by J. Pastor under P.T. Campana supervision, with H.H. Biscaro colaboration. We called CDProWin7 and we need your help to know if the program is working properly. For that, we need you to fill in the forms and agree to our license agreement. If the results are satisfactory and you decide to use them, please reference the authors of this version (J.PASTOR, H.H. BISCARO e P.T. CAMPANA) and the site address as well.

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License:
This version of the program,named CD ProWin7, was developed by Juliana Pastor, Helton Hideraldo Bíscaro and Patricia Targon Campana, based on the original CDPro developed by Robert W. Woody, Narasimha Sreerama, W. Curtis Johnson Jr. and S. W. Provencher. All rights reserved. END USER LICENSE AGREEMENT IMPORTANT - READ CAREFULLY: This End User License Agreement (EULA) is a legal agreement between you (either an individual or an entity) and the authors of this program. This work is only for private use of research and teaching activities. Its reproduction for any profit is not authorized. This reservation of rights covers all document data as well as its content. Is mandatory to mention the name of the CDPRO II authors (J. Pastor, H. H. Bíscaro, P. T. Campana) as well as the authors of the CDPro original program (Robert W. Woody, Narasimha Sreerama , W. Curtis Johnson Jr. and S. W. Provencher)if parts or the whole document generated by CD Pro II program is used or cited. The SOFTWARE PRODUCT is protected by copyright laws and international copyright treaties, as well as other intellectual property laws and treaties. The SOFTWARE PRODUCT is licensed, not sold.

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References

SREERAMA, N.; WOODY, R.W. A Self-Consistent Method for the analysis of Protein Secondary Structure from Circular Dichroism. Analytical Biochemistry 209: 32-44, 1993.

SREERAMA, N.; WOODY, R.W. Protein secondary structure from circular dichroism spectroscopy. Combining variable selection principle and cluster analysis with neural network, ridge regression and self-consistent methods. J. Mol. Biol. 242:497-507, 1994.

SREERAMA, N.; VENYAMINOV, S. Y.; WOODY, R.W. Estimation of the number of a-helical and b-strand segments in proteins using CD spectroscopy. Protein Science, 8: 370-380, 1999.

SREERAMA, N.; VENYAMINOV, S. Y.; WOODY, R.W. Estimation of protein secondary structure from CD spectra: Inclusion of denatured proteins with native protein in the analysis. Analytical Biochemistry 287: 243-251, 2000.

SREERAMA, N.; WOODY, R. W. Estimation of Protein Secondary Structure from Circular Dichroism Spectra: Comparison of CONTIN, SELCON, and CDSSTR Methods with an Expanded Reference Set. Analytical Biochemistry 287: 252–260, 2000.

PROVENCHER, W. S.; GLOCKNER, J. Estimation of protein secondary structure from circular dichroism. Biochemistry 20: 33-37, 1981.

PROVENCHER, W. S. Technical Report EMBL-DA07, 1984. Disponível em http://S-provencher.com

HENNESSEY, J. P.; JOHNSON, W. C.. Information Content in the Circular Dichroism of Proteins. Biochemistry, 20, 1085-1094, 1981.

JOHNSON, W. C.. Analyzing Protein CD for Accurate secondary Structures. Proteins: Structure, Function, and Genetics 35: 307-312, 1999.

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